Resources

Proteins, Genes, Gene Products
• Protein Information Resource: BioThesaurus [Download]
• BioLexicon(2008), buy new
• Entrez Gene (README)
• UniProt (SwissProt & TrEMBL),
• Probes Affymetrix (README)

FACTA (NaCTeM)
• compound(chemical): CAS
• disease: UMLS (README)
• drug: DrugBank (README)
• symptom: UMLS (README)
• enzyme: Expasy EC-numbers (README)
• protein(human): BioThesaurus

Other
• Molecules: ChEBI (README)
• Species: Fabio
• Cell Lines: Fabio
• Experimental Methods: Fabio
• cellular location: DBCLS
• anatomy: DBCLS
• cell type: none
• process/event/function: GO

RELATED WORK
• NLM (Entrez Gene)
• Harvester (EMBL, Heidelberg)
• EBI (Uni-Prot, ChEBI)

TASKS
• Automatic ontology building
• Importing existing resources
• Extending existing resources
• Manual (and semi-automatic) construction, cleaning, updates

COMMON WORDS
• English: WordNet

Visualization
• U-Compare

UMLS ChEBI facta